rs27730233 SNP Detail

Summary

• ID
  rs27730233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12776186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGATGT CTGAGTAGAC
  CAGTTGTACT GCCCCAACCT TCTTTCCCAC AAACATCTGC TGTGCAGCTG GAAGACAGAG
  AAATTGATGT TTTTACATTG GTTGTCCAGC AAGGGGGGCT AGAAACTACA GTTCCCTTTC
  TGTTCAAATC AATTCCCCTC TGGTACATAC TGCTAACGAA AAATCATTGG TAACATCTTG
  Y
  CTTTGTATAA TAGATTTTAT GTGACATTTT CAAAATATTT TACATTAATG TGTGGAGCTT
  CCCCTGGCAA GGTATAATAA GGGAGTACTT CATCTCCATT TTCTAGAAGG GGTAAATGAT
  ACAACAGCAG GCTTGGCAAG GAATAAATCT GCTGCAGCAC TGTGGATGGC CCCCAGATGT
  TCTACCCTCT GCCCCTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37898856	NES08635974	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C	C	C	C	C	C	T	C	C	T
ss146024503	ENSMUSSNP4320999	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27730233					SNP	C	C	T	T	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37898856	NES08635974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12776186 () rs orientation: forward

Symbol	Name	Function Class
Gm69806	predicted gene, 69806	1369 bp upstream
Rr589101	regulatory region 589101	879 bp distal
Rr589102	regulatory region 589102	within coordinates