rs27730231 SNP Detail

Summary

• ID
  rs27730231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12776474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATCTCC ATTTTCTAGA
  AGGGGTAAAT GATACAACAG CAGGCTTGGC AAGGAATAAA TCTGCTGCAG CACTGTGGAT
  GGCCCCCAGA TGTTCTACCC TCTGCCCCTC CTCTGCCTAG CTTTAACATT CCTTGTCCTC
  TGTTTCCACT CTACAAAGTC TGACCTGTGC GAGCCCTGTC CTGCTAGGAA ACAACATAGA
  R
  GGTGGAAGGA CCACCACAGA TGTTTGTGTG TTTTCACTTA CTCATTTGCA GTGATTGGAC
  CATCGCCTTC TGCCCATACA GAGCAGAGTC CTCTCACTTA GGCTCCTGTG AGTCCAGCAT
  CTCTGAAAGC TGAACATCTT TTATTTGATA TTACGTGGGT CTGCAGTGTA AAGCTCCCAT
  AATTTCAGGC TATGGAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37898854	NES08635977	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27730231					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37898854	NES08635977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12776474 () rs orientation: forward

Symbol	Name	Function Class
Gm69806	predicted gene, 69806	1657 bp upstream
Rr589101	regulatory region 589101	1167 bp distal
Rr589102	regulatory region 589102	255 bp distal