rs27729329 SNP Detail

Summary

• ID
  rs27729329
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:13782891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTTTTG TTGACGTGGA
  TCAATTTAAA GTGGCAATTA CTGTAGTCAG ATAACAGCTT AAAAAGCCTT TTTACACATA
  GAAAAGATAC ATAATCACAC AGCATATGGA AGTTCAATTT TCTGAGCTGT AGTTTCAGGC
  CTTGGAGTGT ACCGATATTA AGACCCAGTT TTGAAACCAG ATATCATCCA GTTTTCTTGA
  M
  GTGTATTGCA TTTTGTCATA TGACTTTCTA TTTTAGAAGT GATTCACCGT GCATATTGAT
  GAAAGGTTGG GTGCCCCACT GTGAAAATGT TTTCTTTCTT CCATAGGTAT AGTATTAAAG
  AAAAAAAAAA TTGGTGTGTA GCATTGAATG GCTTTTCAAA ACTACTCCTT AAAAAAATGG
  AAGTCTTCAG ATTTAGGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37894855	NES08637637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27729329					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37894855	NES08637637	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13782891 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr589174	regulatory region 589174			1339 bp distal
Rr589175	regulatory region 589175			826 bp distal
Rr589176	regulatory region 589176			1516 bp proximal
Rr589177	regulatory region 589177			1902 bp proximal
Runx1t1	RUNX1 translocation partner 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr1122	transcription start site region 1122			1858 bp upstream