rs27729328 SNP Detail

Summary

• ID
  rs27729328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:13783076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGTTTTC TTTCTTCCAT AGGTATAGTA TTAAAGAAAA
  AAAAAATTGG TGTGTAGCAT TGAATGGCTT TTCAAAACTA CTCCTTAAAA AAATGGAAGT
  Y
  TTCAGATTTA GGATTCTGGA TTCCATAAAG GCCCTTATGC CAGCACTTAA TTGGTGATCA
  CACTCATGCA TGCTATAACA ATTTCTGTCA CAAGAATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37894854	NES08637638	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C	C	C
ss45626490	mCV24828781	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		T
ss146033088	ENSMUSSNP3794944	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27729328					SNP	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37894854	NES08637638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13783076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14050	CpG island 14050			1893 bp proximal
Rr589174	regulatory region 589174			1524 bp distal
Rr589175	regulatory region 589175			1011 bp distal
Rr589176	regulatory region 589176			1331 bp proximal
Rr589177	regulatory region 589177			1717 bp proximal
Runx1t1	RUNX1 translocation partner 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr1122	transcription start site region 1122			1673 bp upstream
Tssr36523	transcription start site region 36523			1945 bp upstream