rs27729322 SNP Detail

Summary

• ID
  rs27729322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:13784503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTATGT AAAGTAGAGG
  AAAGTAAGCT GAAAGTGTTT GGAGCAAATC AACCTGGGAG CCCAGTGGAT TGAAAGCACT
  GTAGTGAACT AAAAACGGTT AGATTCTGCC TCAGAAAAAA AGTGTTCTGT TTGACCCACG
  CTACTGGGAA GCTGGAAGTG TTCTGCTCAT ACTTTGTGCT GGGCGATGAA CTGGCACAGC
  Y
  CGGTCTTACA AGAGGTTTTT AGGTTGTTTG GGGTTTCCAG ATCAATAAAA AAAGCTTTGT
  GGTCTGTGCC CTTGTTTGTT TTAAACCAAA CTTCCCAGTA ATGCCTGTTA AAATTAGAAG
  ATGAAGGACA GCTTTCAGTG TGAGTTGGGG TCAGGTCAAC ATTGCCATCT TTTGGCAAAA
  TAAGGGTTAA CTTGGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37894848	NES08637647	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27729322					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37894848	NES08637647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13784503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14050	CpG island 14050			466 bp proximal
Rr406870	regulatory region 406870			1972 bp proximal
Rr589176	regulatory region 589176			within coordinates
Rr589177	regulatory region 589177			290 bp proximal
Runx1t1	RUNX1 translocation partner 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr1122	transcription start site region 1122			246 bp upstream
Tssr36523	transcription start site region 36523			518 bp upstream
Tssr36524	transcription start site region 36524			578 bp upstream