rs27729317 SNP Detail

Summary

• ID
  rs27729317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:13785783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGAAAAA TATTATCTTT GGAAACTGAA GTGTTTCTGT
  GATTGCTGCC AGGGAAAACT GTGTTTGTGA AGCCTGCTGC AGGAGAAGGG CTGTCTCTGC
  K
  GCTCTCCAGA ACTCTCTAAA TTGTCCTGTG CCGAATGCAG AGCAGATAAA GGCAGGGCAC
  ACAGAGATCC TCCAGCTGGC TGGCGCATGC AGATTATTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37894843	NES08637652	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	G	G	G		T	G	T	G	T	T	T	T	T
ss45611038	mCV24828771	ABI	CRAMUS_MOUSE	f	SNP	G	T					T		G
ss146033096	ENSMUSSNP2991785	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27729317					SNP	G	T	T	G	G	G	T	T	G	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37894843	NES08637652	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13785783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14050	CpG island 14050			559 bp distal
Rr406870	regulatory region 406870			692 bp proximal
Rr589176	regulatory region 589176			991 bp distal
Rr589177	regulatory region 589177			within coordinates
Rr589178	regulatory region 589178			1990 bp proximal
Runx1t1	RUNX1 translocation partner 1			Intron
				Noncoding-Transcript-Variant
Tssr1122	transcription start site region 1122			992 bp downstream
Tssr36523	transcription start site region 36523			712 bp downstream
Tssr36524	transcription start site region 36524			663 bp downstream