rs27712420 SNP Detail

Summary

• ID
  rs27712420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9823973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAGACC AGCCAGAAAA
  CATACTTGGG GCTCTGGGTG CAACTTAATG GTAGAGCATC TGCCTACCAT AGGTAATACA
  TCCTTTGCTG TTGGGATGGC GTTATGGAGG TGGTAGGTAA CTGCCTCAAA GGGTATTACG
  AGACACACCA ATGTTTATCC TTTATCAAAA CTGGTTCTCT TCCTTTGTGG CATGAATATG
  R
  CATTTTGTCT GTAACAGCTG GATGGCATAC CATATTTTCT TTCCTCTCTA GCTCCCAGGA
  AATGTAAGGC CAATTATTTA GGTCCTAGAG AACAGTTTAT TTGCTACAAG GTTTCTCCCT
  TTGTCCACAG TGCAGGAAGA TACTATTCTT TTCAGTGACT AATCTCTGGG AGGACAAAAT
  ACTTGGTCCA GAAATGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37854367	NES08644172	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27712420					SNP	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37854367	NES08644172	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9823973 () rs orientation: forward

Symbol	Name	Function Class
4930412C18Rik	RIKEN cDNA 4930412C18 gene	562 bp downstream
Cpgi14021	CpG island 14021	1851 bp proximal
Rr588747	regulatory region 588747	782 bp proximal
Rr588748	regulatory region 588748	1207 bp proximal
Rr588749	regulatory region 588749	1261 bp proximal
Rr588750	regulatory region 588750	1849 bp proximal