rs27712416 SNP Detail

Summary

• ID
  rs27712416
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9824194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGCATAC CATATTTTCT
  TTCCTCTCTA GCTCCCAGGA AATGTAAGGC CAATTATTTA GGTCCTAGAG AACAGTTTAT
  TTGCTACAAG GTTTCTCCCT TTGTCCACAG TGCAGGAAGA TACTATTCTT TTCAGTGACT
  AATCTCTGGG AGGACAAAAT ACTTGGTCCA GAAATGGGCA GGGTCCCCCT GGGACCAGAG
  W
  GTTGGTAGCA CAGCTTCCTC ATCCCAGAGA TCTCTGTGTT AGCACACAGC TTCCTCATCC
  TAGAGATCTC TGCGTTAGCA CACAGCTTCC TCATCCCAGA GATCTCTGTG TTAGCACACA
  GCTTCCTCAT CCCAGAGATC TCTGTGTTAG CACACAGCTT CCTCATCCCA GGGGATCTCT
  GCGTTAGCAC ACAGCTTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37854363	NES08644176	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27712416					SNP	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37854363	NES08644176	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9824194 () rs orientation: forward

Symbol	Name	Function Class
4930412C18Rik	RIKEN cDNA 4930412C18 gene	783 bp downstream
Cpgi14021	CpG island 14021	1630 bp proximal
Rr588747	regulatory region 588747	561 bp proximal
Rr588748	regulatory region 588748	986 bp proximal
Rr588749	regulatory region 588749	1040 bp proximal
Rr588750	regulatory region 588750	1628 bp proximal