rs27712415 SNP Detail

Summary

• ID
  rs27712415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9824692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGCTTC CTCATCCCAG
  GGGATCTCTG CGTTAGCACA CAGCTTCCTC ATCCCAGAGA TCTCTGCGTT AGCACACAGC
  TTCCTCATCC CAGAGATCTC TGCGTTAGCA CACAGCTTCC TCATCCCAGA GATCTCTGCG
  TTAGCACACA GCTTCCTCAT CCCAGAGATC TCTGCGTTAG CACACAGCCT CTGCTGCAGC
  R
  GATGTTGACT CCTGAGTGGA AGGAAGCCTG CACTTGGCCG AAACCTGGCA AGCACACAGC
  CTCTTTCAGC TAGGGTGCGG TGCTAAGTGA GCGACCTTGT AAGTGCCTAG TGGGATCTGG
  GCCTACTGTT CAGCCCCTCA GACAGTAGAA GAAACAATGG GGAAAGTCCC CTAAATAACT
  GTCGTTGAAG TTTTTGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
ss37854362	NES08644177	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
rs27712415					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37854362	NES08644177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9824692 () rs orientation: forward

Symbol	Name	Function Class
4930412C18Rik	RIKEN cDNA 4930412C18 gene	1281 bp downstream
Cpgi14021	CpG island 14021	1132 bp proximal
Rr588747	regulatory region 588747	63 bp proximal
Rr588748	regulatory region 588748	488 bp proximal
Rr588749	regulatory region 588749	542 bp proximal
Rr588750	regulatory region 588750	1130 bp proximal