rs27712408 SNP Detail

Summary

• ID
  rs27712408
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9825534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTATCCT GTTTGCAAAC
  TGAGTCATAT GAATTGAAGG GAATTGACTT CTGCAACTCA GTTCTGCCAG GGAGGTGCAC
  CCAGGCTACA CAATGGATTC CCCCGAGGCG CAGCACCACC TTCACAACTA CAGCGCACCT
  TCATCTGACT TCTCTCTCAC CCATGTGTTA TTAACCACAT TATGCCCAGT AGTGCTTCAG
  S
  TCACTGAGAG TTCCCTCCAA CCTCGTTTGG TGGGAAACAG TAGGGGCATC GTTGATTCCA
  GGAGCAGTGG AGGGTGACCA GTTACACCTC TAAACAGCCA CAGCCAACAC CGTGCTGTTG
  GTACTACTAG ACCGAATATC CAGGGCGGAA ATGTTGGCAC TCTTTTCAGC CCAGACAAGA
  ATGGGACAAG CAGGAGACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37854355	NES08644187	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27712408					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37854355	NES08644187	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9825534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14021	CpG island 14021	290 bp proximal
Rr588747	regulatory region 588747	758 bp distal
Rr588748	regulatory region 588748	within coordinates
Rr588749	regulatory region 588749	279 bp distal
Rr588750	regulatory region 588750	288 bp proximal