rs27712406 SNP Detail

Summary

• ID
  rs27712406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9825991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGTGCA GTGACACGGT
  CGTGTTGCTG CCTGAACGCC AGAGGGCGCT GCTGTCCCGT TTCTGAGCTC TTGGCTGGAG
  TTCTGCTTTG TGTCAAGGAC CTGACAGATC TGGCATCTTG AAATAAAGCC AAATGTTTTA
  ATCCAGACGC GAAGCACTTG GCCCTTTGCA GCACATTCAG GCAACCATCA GTGAGATACG
  R
  CGGAACCGTC GCCAGGTTGG TTACAATGCC TTCTGAGGGA CAGAGTTTTC CAGGTGGAAG
  AGCAGGTTTC AGATTCTATG CAAAAGAAAC AAGCCTTCGG GGAGGACGTT AAACAATTTC
  CATCTTTTTG AACTCTGTCA TGAGAATTAT CTCCGAACTA TGCGCTGGCT CTTCATTCTC
  TGAAGTGCCA CAGAGAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37854353	NES08644190	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27712406					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37854353	NES08644190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9825991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14021	CpG island 14021	within coordinates
Rr588747	regulatory region 588747	1215 bp distal
Rr588748	regulatory region 588748	within coordinates
Rr588749	regulatory region 588749	736 bp distal
Rr588750	regulatory region 588750	148 bp distal