rs27712405 SNP Detail

Summary

• ID
  rs27712405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9826015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGCCTG AACGCCAGAG
  GGCGCTGCTG TCCCGTTTCT GAGCTCTTGG CTGGAGTTCT GCTTTGTGTC AAGGACCTGA
  CAGATCTGGC ATCTTGAAAT AAAGCCAAAT GTTTTAATCC AGACGCGAAG CACTTGGCCC
  TTTGCAGCAC ATTCAGGCAA CCATCAGTGA GATACGGCGG AACCGTCGCC AGGTTGGTTA
  Y
  AATGCCTTCT GAGGGACAGA GTTTTCCAGG TGGAAGAGCA GGTTTCAGAT TCTATGCAAA
  AGAAACAAGC CTTCGGGGAG GACGTTAAAC AATTTCCATC TTTTTGAACT CTGTCATGAG
  AATTATCTCC GAACTATGCG CTGGCTCTTC ATTCTCTGAA GTGCCACAGA GAATGCCACT
  CTCCCCCACA GGTTTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37854352	NES08644193	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27712405					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37854352	NES08644193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9826015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14021	CpG island 14021	6 bp distal
Rr588747	regulatory region 588747	1239 bp distal
Rr588748	regulatory region 588748	within coordinates
Rr588749	regulatory region 588749	760 bp distal
Rr588750	regulatory region 588750	172 bp distal