rs27712401 SNP Detail

Summary

• ID
  rs27712401
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9826335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTATCTC CGAACTATGC
  GCTGGCTCTT CATTCTCTGA AGTGCCACAG AGAATGCCAC TCTCCCCCAC AGGTTTGTGT
  GTTAGCCTTT GGTTCTCACT AGATCGACCT AATTTGAGAC GTGGAGTTAG GACCTACCTT
  TTGGAATTTT TCAGTTGTTG ATGATAGTGG GGGTGCCTTT GACTTTACAC CTGATCCACA
  S
  TCTCTTCTCT CTCTGCACTC AATGCTCCGG CAGCCATGAA AATCTTGCTA CCCAAGCACA
  GGAGACCAAG CCACCACAGA CTGAACTCTC TGGAGCATGA GCTAAATAAA TCTTTCCTAT
  GTGAAGTTGT TTGTGTCAGG TATTTTGCAG CAGTGATGAG AAATATAACA AATATCTTCC
  CATGACCAGA GTGTCCATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37854348	NES08644198	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27712401					SNP	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37854348	NES08644198	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9826335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14021	CpG island 14021	326 bp distal
Rr588747	regulatory region 588747	1559 bp distal
Rr588748	regulatory region 588748	within coordinates
Rr588749	regulatory region 588749	1080 bp distal
Rr588750	regulatory region 588750	492 bp distal