rs27711799 SNP Detail

Summary

• ID
  rs27711799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12333118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACAAAGC AGGGAAGGAA
  AACAAGTCAT TGAACAAGGA ATTTCAGAGC AAAGTCTGCA TAATAACCAT CACATGAATA
  AAATACTGGT AAGAACTGTC TGTAATAGAC TCCTTTTAGT TTACATAGCA TAGAGATAAT
  CATGGTGTCT ATTTAGCATG ATGTTGCATG TTTCCCATAT ATGTCCTGTT TAGCAGAGAT
  R
  CTGTTGCCTT GCTTGGGGAG AGATCCTAAG GACTGTGAAC AGACAGACCT TTGGTGGTAC
  TCCATCTCAG CTTCTCTTAT TGGCTCAGTA CTGAGCAAGG CTAGCATTCT CTTCTTGCTG
  AATAGGGAGT CTGTGCTGCT TGAGTTCTAA CCGGGAACAG CAAGCATACA AGGTATATCA
  GCAGAGAGAA TTTAGCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37900418	NES08637523	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27711799					SNP	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900418	NES08637523	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12333118 () rs orientation: forward

Symbol	Name	Function Class
Rr589072	regulatory region 589072	1342 bp proximal