rs27711794 SNP Detail

Summary

• ID
  rs27711794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12333819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGAACT CTGGCTTCCT
  CAGCTATGAG ATAGTCCTGT AAGGATGTTG AATAGGCAGT CCAGGGGACC AAACTTTTCT
  TCTTCCTCAA GCCTGCAGTC TTTCTCTGGT ACGCCAGTCA ACAGAGTTGC AGGAAAAGTG
  GTACTGTGGT CTGGAGGGTC CAGCACTGCT CTCTCTGAGC AGTAGAGAAT GGATATTAAC
  Y
  GGAGAAGCAA TCACTTATCC CATCAACTGG TTATTGTCAG CAATCATCAT TATGACTTAC
  ATAAAGAATC TAATATGATG AAGGTCCTCA TGTTGGGAGG GCTAAACCCA TCAGATTTGT
  AATTTGTTTT CAAGTTTGTG TTTGTATAGT CTTCTCTCTA ACTGCCATTC AGGATCATTC
  CTGTGGAGGG GTTGGCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37900413	NES08637481	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27711794					SNP	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900413	NES08637481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12333819 () rs orientation: forward

Symbol	Name	Function Class
Rr589072	regulatory region 589072	641 bp proximal