rs27711789 SNP Detail

Summary

• ID
  rs27711789
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12333927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACGCCAGT CAACAGAGTT
  GCAGGAAAAG TGGTACTGTG GTCTGGAGGG TCCAGCACTG CTCTCTCTGA GCAGTAGAGA
  ATGGATATTA ACTGGAGAAG CAATCACTTA TCCCATCAAC TGGTTATTGT CAGCAATCAT
  CATTATGACT TACATAAAGA ATCTAATATG ATGAAGGTCC TCATGTTGGG AGGGCTAAAC
  S
  CATCAGATTT GTAATTTGTT TTCAAGTTTG TGTTTGTATA GTCTTCTCTC TAACTGCCAT
  TCAGGATCAT TCCTGTGGAG GGGTTGGCTG TGTACACTTT GAAATTAGCT AATAACCAAT
  TATAAACTAT AGGCAAATTA ATGAAGTTAT CTTACAGTTT ATATTACATG AGATGACACA
  TATGACTGCT AACTCACAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37900408	NES08637487	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27711789					SNP	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900408	NES08637487	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12333927 () rs orientation: forward

Symbol	Name	Function Class
Rr589072	regulatory region 589072	533 bp proximal