rs27711781 SNP Detail

Summary

• ID
  rs27711781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12335118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGGAGGG GTTTTTCTTT
  CTCTTCCCAC TCTCTCTGTC TCTCTCTCCT GCTCGTGCTG TCATTCTCCC TCTAGCTCTC
  TTCCCCTCCC CCTCTCCTTT CTTCTCTCTC TTCCCTTCCC TCCTGTCTCC TCTCCATCAC
  CCCACTCCTG TTTCCCCTCC TTTTCTCTCT TCCTCCCATC ACCTCCTTCT GTCATGGTTA
  R
  AAGGAACAAG GACAGCTTCT GAGGAGCGTG CCAGCTCTTG TGAGGGTGGT GACAGAGTGG
  GAAAATTGGG TCTAATTCGA GGTGATGAAA AGTCTCTTTC TTTACTTTTT TTCCCTTGTT
  AATTTAAAGC AGTGCTGCAC TCTTCTCCCT TTGCCCAGAT GGTTTATCCT GAGAAGCTGA
  GCTACAGAAA AGGCCAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37900400	NES08637432	PERLEGEN	MM_PANEL2	f	SNP		A	A		G	G	G	A	G	A	G
ss45640350	mCV23759355	ABI	CRAMUS_MOUSE	f	SNP	G	A		G
ss146019581	ENSMUSSNP6386337	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27711781					SNP	G	A	A	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900400	NES08637432	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12335118 () rs orientation: forward

Symbol	Name	Function Class
Rr589072	regulatory region 589072	within coordinates