rs27711772 SNP Detail

Summary

• ID
  rs27711772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12336773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTCTAG ATAAATAATA
  ACAACCCGGG AGCATGTCTC GCTCGAGGAA CTGTGTTGGC CCCTTCAGGC AGCGTGTTAG
  CTTTCAGCAC AGAACATCCC TGTGACGATT TGACTTGGTA TCGGAGACGA TAGTCTCTCT
  GCACCTGTCC CACCTGGAGC CTCTTTGCTG TTTGTTGCTT CTGCACTGTC TTAGGAACCA
  Y
  TGCTGAGAAG TCACACCTGG GCTTGCAATG ATGCTTGCTG AATGTATGTT AGATTCTGAC
  CAGGCAGAAA GCCTCCTCCC TCCTTTCCCT GTCTCGGGGC AAAACCCCTC CCGATACTGT
  ATGGCTGCTA AGGTGTGAGT CTGAATCATG GCCAGTGGAT CAAAGCCAGA CTAGAGGAAG
  CTAAGAAATA GAAGGGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37900391	NES08637375	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27711772					SNP	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900391	NES08637375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12336773 () rs orientation: forward

Symbol	Name	Function Class
Rr589072	regulatory region 589072	1192 bp distal