rs27710380 SNP Detail

Summary

• ID
  rs27710380
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:13363023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGATAATTA AAATACAATG AACATTGGAA ATATTGTCTT
  ACTTTGAAAA CTAAAAATAA TGAATTAATA ATACAATGTT CATAAAGCTA AGCCAATAAA
  K
  AAACTATCTA ACTTGTAAAT AAAAATATAA AAGAACATTA AATAAAATAT TCAGAATAAG
  ATAATGGAGG CTCAATAAAA TCGTATAGGT GACTGAGAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37896499	NES08649235	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	G	G	G	G	T	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27710380					SNP	G	T	T	G	G	G	G	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37896499	NES08649235	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13363023 () rs orientation: forward

Symbol	Name	Function Class
Rr589139	regulatory region 589139	1653 bp proximal