rs27710378 SNP Detail

Summary

• ID
  rs27710378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:13363423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTACACT GTGGAGCCTA
  CAAAGCAAGC ACTGAAAGAT AACTCTTCAG TTGTGAAAGG TATTGAAGTC TGAGATGCTA
  TTGTGTTAAA TGTGATCACT CACTCTGAAT TGATGTGAAT TAGGTAGTAG GGGATATGTC
  TGCAAGAACT TTCTAGCAGG TCTACTGGAA TCAAAACAGG ATTCAGAGGG AGAATGTGTG
  Y
  CTTGAGACAT TTAGTGAGGA CCTGACTGTC ACATGTCTTC TATGGTTTAG GAGTCACCCT
  GTCAAGGGCG AGGATTGATG TCCAGGACAT GAATTGGATG GCCTCTTTGA CCCTCTTCAG
  GATGGGACTC TGGGTCTCTG GGGCAGATCA TTCTCTTCTG AGCCCTGACA GCTGCATGAC
  CTCGCTCTTT CTCTTTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37896497	NES08649242	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C		T	C	C	C	C	T	C	T	T
ss45590375	mCV22945883	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss146029423	ENSMUSSNP372946	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27710378					SNP	C	T	T	C	C	C	C	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37896497	NES08649242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13363423 () rs orientation: forward

Symbol	Name	Function Class
Rr589139	regulatory region 589139	1253 bp proximal