rs27710374 SNP Detail

Summary

• ID
  rs27710374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:13364342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTCCAT AACCAAGGTC
  AGGTCAGTTG TGTGTGTCTG TGTGTGTGTG TGTGTTTTGC TTTTGCTTTT GTTTGTTTGT
  TTGTTTGTTT GACTCATAGA TACACTAATA CACTCTGCCT TGCCACACTT TATAATCTTC
  ATACACCTCA AATAGTTTCA GGTGTAGGTA TATACTGAAC TCATCAGTCC ATTACCCTCA
  R
  CTCCAATTAG TGTTCCCCGT GAAGTATATT CTTTCTTTTG GTATTTCTGT TAGTTGCTTT
  GCTTGTTCAT TTGTTTGTTT TTGACTCAGT ATGATTTCAT GGCATTACTT TCCATTTGTA
  GAAATTTATC GTTCTTTGAA ATCTCTTCAT GTACAAAAGT CTAAAATAAG CTTGTTTTAA
  AGAGAATGAA TTCCAACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37896493	NES08649254	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27710374					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37896493	NES08649254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13364342 () rs orientation: forward

Symbol	Name	Function Class
Rr589139	regulatory region 589139	334 bp proximal