rs27710367 SNP Detail

Summary

• ID
  rs27710367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:13365744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGATT AGAAGTAGAT
  CCAGCCCCCT GAACTCCCTT GCCTGAGGAT TTTTCCTGCA GATTTAGGCA CGGGAGGAAA
  TTCTTTCTCT CTTTGGTTTT GTTGTGACTG GTGACTCAGA AACAACTGGT TGGTAATGAT
  TATTAATGTA CAGGAGTATG TTGGCTTTAT AGTGATGCAG AATCACCTGT CCAAGAACTT
  Y
  AACACTGTTA CTTTCATGGA ACCACTGGCT GAAGGATTTA CTGGAAAGGG AAAGATACTT
  GGAAGGTACA AAAACTCAGA GTCTCGAAGA GATGAACTTA ACTCTGTTTC ATAAATCAGT
  TCTATTCCCT TTGAAAGATA AAATAATGTT TTACTTAACT AGGGAGATCG AGAAGTCTTA
  CAAATGTATA ATACCATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37896486	NES08649269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27710367					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37896486	NES08649269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:13365744 () rs orientation: forward

Symbol	Name	Function Class
Rr589139	regulatory region 589139	455 bp distal