rs27709977 SNP Detail

Summary

• ID
  rs27709977
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12626362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATAAATG ACACAGTTAC
  TATACTTGAC ACTGTAAACA TGGTCGTGAC ACAGGAATAT TTACAAGTGA AAGGTTAGAT
  TAAGAATGTG ATATAAATGC ATCCATCATT AGTCTTATTA AAGCTGAAAG TGGGTTAAAT
  CTTGTGACTA AAATTACTGT CCTTAATTTT TTAATTTTTA GTTCACAGAC CATTGTTGTT
  K
  CATGATTCAC AATTATGGGA AAGAATCCTT AGTTCTTATT CCTCTTGATT GCATTGACTC
  TTTATATCTA ATTTGTTCAG TTAATAAAGG AGCTGAAGGG GTTTGTAACC CCATAGGAAG
  AATGACAATA TCAACCAACC AGGCCCCCAG AGATCCCAAG GACTAAACCA CCAACCAAAG
  AGTACACATG GGGGGACCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37899396	NES08638096	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T		G	T	T	T	T	G	T	G	G
ss45686734	mCV22947730	ABI	CRAMUS_MOUSE	f	SNP		G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27709977					SNP	T	G	G	T	T	T	T	G	T	T	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37899396	NES08638096	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12626362 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	732 bp proximal