rs27709976 SNP Detail

Summary

• ID
  rs27709976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12626392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAAACA TGGTCGTGAC
  ACAGGAATAT TTACAAGTGA AAGGTTAGAT TAAGAATGTG ATATAAATGC ATCCATCATT
  AGTCTTATTA AAGCTGAAAG TGGGTTAAAT CTTGTGACTA AAATTACTGT CCTTAATTTT
  TTAATTTTTA GTTCACAGAC CATTGTTGTT TCATGATTCA CAATTATGGG AAAGAATCCT
  Y
  AGTTCTTATT CCTCTTGATT GCATTGACTC TTTATATCTA ATTTGTTCAG TTAATAAAGG
  AGCTGAAGGG GTTTGTAACC CCATAGGAAG AATGACAATA TCAACCAACC AGGCCCCCAG
  AGATCCCAAG GACTAAACCA CCAACCAAAG AGTACACATG GGGGGACCCA TGGCTCCAGC
  TGCATAAGAA TCAGAAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37899395	NES08638097	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	T
ss146023299	ENSMUSSNP5545311	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27709976					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37899395	NES08638097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12626392 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	702 bp proximal