rs27709970 SNP Detail

Summary

• ID
  rs27709970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12627512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGGTCGA TAAAAACTTT
  GCTAACATGT GCTATGTGAT AATCAAAGGA GGCCAGATGA CAAAGCATCT GCTAACATGT
  GCTATGTGAT AATCAAAGGA GGCCAGATGA CAAAGCATCT GATTGCTGGG CTAAAGGAAC
  TGACTAAGTG ACCAGGAAGA CTTTAAGCAA TGATGACAGA AAAGAAAGCA GAGTTTAAAA
  R
  CAAAAATACA GGAAGGGGTC CCGACTTAAT TTGTGTTCAC CATCCTGGAA TTTGGGGACT
  AAGGTGAAGA GGAGACAACT CTAGCCCTTG CAAGCTTGAC CACATTTGAT CTGAGTTTGG
  AGAAGCTGTC AGGGGTGGAC ACAAACTGAA AGCTCTCTGT AAGGAGGTTG ATTATTATGC
  CAGGCTGCCC CTGGTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37899389	NES08638090	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27709970					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37899389	NES08638090	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12627512 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	within coordinates
Rr589093	regulatory region 589093	981 bp proximal