rs27709968 SNP Detail

Summary

• ID
  rs27709968
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12628075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTTCCC TGCTGCCAGT
  TCCTCCAAGA TGTTCCTACC TTGCTACCCA CCTAACTTGG TGTTCTCACT TTCTTTCTCT
  CTCTCTTTCT CTGTTTCTTG CCCCCTATTT CTAATACATA CTTTTTCTCT AGCATGTCTG
  TACAAACTAA AACAAACAGA AAATAAGAGC TATACCCAGC ACCCCCCACC ATCCCATCAG
  W
  GGGAATAGCC TTTCTAGCAG TCTAGTGAAA GGCTTCCTTC AAGTTCCCTT TTACTCCCTA
  GTGCATAAAT AAGCAAGATT CAATGTGTTT TTAATTGTTC AAAATGTAAG CAAGACTTGG
  TACTGCAAGA CTGCCACTAT TGCTTTGTAA ATTACCTTTC ATACAGATTT CCTGTTTCCT
  CTTACCTGCT GATGTTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37899387	NES08638070	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	T		T	T	T	T	A	A	A
ss45579189	mCV22947718	ABI	CRAMUS_MOUSE	f	SNP		T	A				T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27709968					SNP	T	T	A	A	T	T	T	T	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37899387	NES08638070	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12628075 () rs orientation: forward

Symbol	Name	Function Class
Gm37985	predicted gene, 37985	within coordinates
Rr589092	regulatory region 589092	338 bp distal
Rr589093	regulatory region 589093	418 bp proximal