rs27708248 SNP Detail

Summary

• ID
  rs27708248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9267656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGGAAA ATGGATGCAA
  CTGGAAATCA CCATGTCAAG TAAAATAAGT CAGGGAAGAC AATACAAATA TTACTTGTTT
  TTTCTCTTAT GCCGACTCTA AAACAATGGA AGGAGAATGA CATGAATGAA GACAGGAACT
  ACTCCAGTAC AGGAAGTAGA TCAGAGGTGG AGAGAGGCAG AGAAATGATC AAAGTATGCA
  Y
  GTACATGACT GAAAACAGCA TAATGGGAAT TAATTAGGGA AAGTGTTTTC TTTGGACAAG
  TTCTCCTTTA GTGTCTTTGC ACATGTCTAC GATGAGCTGA GCTGTGCCTT TGAAGGCATC
  CCTCTAACTA AGCTTAAGTA ATGAAAGCTC ACCATTCCCT GCAGACCATT TTGATGTGCC
  AAGCCTGTTC AGATCAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ
ss37857379	NES08661243	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ
rs27708248					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857379	NES08661243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9267656 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	Intron
Cpgi14015	CpG island 14015	1653 bp proximal
Rr588683	regulatory region 588683	1399 bp proximal
Rr588684	regulatory region 588684	1672 bp proximal
Tssr36453	transcription start site region 36453	1629 bp upstream
Tssr36454	transcription start site region 36454	1682 bp upstream