rs27708246 SNP Detail

Summary

• ID
  rs27708246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9268742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACATTT TGACGTGGAT
  CTGTAGGAAG ATTATACTTT CTCACTTAAT GTCTTAGGAT ATGGGATACT GTGTGGATTT
  AAATGTTTTT GTCCTAAACC ATACATCATT GCTCCTTTAT CGTTCTTTCT TTCTCTCTTT
  CTCTGTCTTT CTTCTTTTAG CATGTCTTTG GTACTTTATT AAGTTATGCA TTGCGTTTTA
  R
  TGGTAAGCTG ACTTTTAAAA TGTTTGTTGG ATCTTCAGCA TTTTCTTTTT ATTATGAAAT
  AGCTATGCAT GAAACACATT TGTTGTGATT TTTTTCAAGT GATAATTTAC ATGCATGATT
  CTTGAGATTA AAAAATATTT TATGCATTCA ACTTTGTTGA CCTCTTTCCT GTGATTTCTT
  TTATTATTCT GCTTAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37857371	NES08661254	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27708246					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857371	NES08661254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9268742 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	Intron
Rr588683	regulatory region 588683	313 bp proximal
Rr588684	regulatory region 588684	586 bp proximal
Tssr36453	transcription start site region 36453	543 bp upstream
Tssr36454	transcription start site region 36454	596 bp upstream