rs27708245 SNP Detail

Summary

• ID
  rs27708245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9269008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGAAAC ACATTTGTTG
  TGATTTTTTT CAAGTGATAA TTTACATGCA TGATTCTTGA GATTAAAAAA TATTTTATGC
  ATTCAACTTT GTTGACCTCT TTCCTGTGAT TTCTTTTATT ATTCTGCTTA GAAAATGTTT
  TAAATTTTCA TTGATGTATT TAACTTACCT GTTTTTATTT TGACAAGATA GAGTCTTAAT
  Y
  TGAGCCTTTT CCAACAGCCC ATTTTCTGAA TGTCATGTCA TTTGTTAATA AAAATAATTA
  TTTTTCCATA GACATATGGT GCTTTACCAT TTGTTTGAAA TTTGAAATAA TCTGCCCAAA
  AGAGTCTGCT TTAAATGTGG AGAGTGGTGG TTTCCAGTAC TTTTTGTCCT AGTTGTTAAA
  GGATTACAAC AATCCTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37857370	NES08661256	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27708245					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857370	NES08661256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9269008 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	Intron
Cpgi14015	CpG island 14015	301 bp proximal
Rr588683	regulatory region 588683	47 bp proximal
Rr588684	regulatory region 588684	320 bp proximal
Tssr36453	transcription start site region 36453	277 bp upstream
Tssr36454	transcription start site region 36454	330 bp upstream