rs27708243 SNP Detail

Summary

• ID
  rs27708243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9269871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCCAGC CATCAGCACC
  CCATCTCCAC CATCGCCGTC ATCATCTCCA CCAGCACCGG CGCGGTAACT ACAGTCCACA
  CAACTGTGTC TTGTCACTTA GACAAAGCCT GAGGTCGGCA AGGTAGAGAG GGGAGATCTC
  AAGTTCTCAG GCATAGAAGG GAAAGTTCAG GTGGAGAGAC CCCCTGAAAA CAAAGAGAGA
  Y
  GCCTGCTCGA GAGAAAGGTG AAGTGGAGGC AGCAGGAAGA GACCCCAGCA AAGGGACAGA
  TGGGGACTTG CCAGACACCA GCAGTTAGCC AGCTGCCTTT CAGCAGATTA GAGACTGTTT
  AGTTCAGGAA ATTAACATGG CCTGAGGCAT AGTATGATTC CAGGAAGAAA TGTTAGCTCA
  GTCCCGATAT TCTGGTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37857368	NES08661259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27708243					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857368	NES08661259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9269871 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clvs1	clavesin 1			Intron
				Noncoding-Transcript-Variant
Cpgi14015	CpG island 14015			57 bp distal
Rr588683	regulatory region 588683			544 bp distal
Rr588684	regulatory region 588684			within coordinates
Tssr36453	transcription start site region 36453			536 bp downstream
Tssr36454	transcription start site region 36454			509 bp downstream