rs27708241 SNP Detail

Summary

• ID
  rs27708241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9270898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTAACC AGGATCGTTT
  GCTTTATAAG AGCTAACAAA GTACAGCAAA CAAGTGCTTT CACCTGTCAT AAAGAAGTGT
  CTGGAAAGGG ACTCTTTGAA TTGATTTTAC CGAACTGCAA AGTATTGTAG TTTCTTTTGC
  TGCTGTTTTT GTTTTGTATA TTTTTTATTG TTTTTGTCAA CATAAAATCA GGATCTTAAT
  Y
  TCAATGCGTG GTATCTAAGT AGAAATGTTG TTAGGTCATT GGTCACAAGA ATATTTAAGC
  TAAAGCATAG AAAACCCCAC TCAACAGTAC CCTGGTGTAT TTAATCTGTC TCTTGGAGAA
  GGGACACTGA AGCTAGTTTT GTTCTTGCTT CTCTTTAGAG GCACCACCCA AAAGAAAAGA
  GACTCACAAA CAGATATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37857366	NES08661262	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27708241					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857366	NES08661262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9270898 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clvs1	clavesin 1			Intron
				Noncoding-Transcript-Variant
Cpgi14015	CpG island 14015			1084 bp distal
Rr588683	regulatory region 588683			1571 bp distal
Rr588684	regulatory region 588684			172 bp distal
Tssr36453	transcription start site region 36453			1563 bp downstream
Tssr36454	transcription start site region 36454			1536 bp downstream