rs27708239 SNP Detail

Summary

• ID
  rs27708239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9271105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGTATCT AAGTAGAAAT
  GTTGTTAGGT CATTGGTCAC AAGAATATTT AAGCTAAAGC ATAGAAAACC CCACTCAACA
  GTACCCTGGT GTATTTAATC TGTCTCTTGG AGAAGGGACA CTGAAGCTAG TTTTGTTCTT
  GCTTCTCTTT AGAGGCACCA CCCAAAAGAA AAGAGACTCA CAAACAGATA TGTTCTGGAA
  R
  AAGCTTTGTG CAAAAATTTA TGCTCAATAA TCTTTATGGA TGAGGACTAG TCATGTCATG
  ACAAAAGTTT GCGTATAGTT ACTAATTATA TGAACTTAGG CTCAGTTCTA TTTGTCTCTA
  AATTTTACTC ACTTTTTTAA GCTTAAAGCA TGAAAATATT TGGCAAAGCC TATGCATTTA
  GTCACATAGC TACTGTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37857364	NES08661265	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27708239					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857364	NES08661265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9271105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clvs1	clavesin 1			Intron
				Noncoding-Transcript-Variant
Cpgi14015	CpG island 14015			1291 bp distal
Rr588683	regulatory region 588683			1778 bp distal
Rr588684	regulatory region 588684			379 bp distal
Tssr36453	transcription start site region 36453			1770 bp downstream
Tssr36454	transcription start site region 36454			1743 bp downstream