rs27697563 SNP Detail

Summary

• ID
  rs27697563
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3607599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAGTA ATGAGGCTAG
  AAAATGATAA AGGAAATGAC TTGGTACGAA GTGTAGATGG AATGAACTGC AATGGGAAGT
  CACTTTTTTT TTTAAGAGAG AAAATATATC TGTGTGAGGT TTTTAAAATG AAAAAAGATT
  GAGTAATAAA AGCTTGAAAG AGTGTGAAGA GTTGGTTATG AATCTGCTGT CTGAATTCAT
  M
  AATGTATCTT TAGCAGACAT TAAATTCCAT TTCAGAGAGG TTATGCTATG TCCTACTGAC
  TGCCAAGCTG AGTATGCAGA TAGAGCCTGG CTTAGGAATC GTTTGTGTAG GAGATGGTAC
  CCATTGATTT TTTTTTTTTT TTTAAGCTGG GGAAATCTTT TTCTGGGTTT CCTATTTCCT
  TGACCTCTCG TTCCCCTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875893	NES08669897	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27697563					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875893	NES08669897	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3607599 () rs orientation: forward

Symbol	Name	Function Class
Gm69303	predicted gene, 69303	within coordinates
Rr398149	regulatory region 398149	35 bp downstream
Rr588186	regulatory region 588186	within coordinates
Rr588187	regulatory region 588187	188 bp distal
Rr588188	regulatory region 588188	931 bp proximal
Rr588189	regulatory region 588189	1306 bp proximal
Rr588190	regulatory region 588190	1448 bp proximal
Tgs1	trimethylguanosine synthase 1	Intron