rs27697562 SNP Detail

Summary

• ID
  rs27697562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3608037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATACACTC ACTGTAAAAC
  CAGAACTAAT TTGTTCAAAA CATCTTTTTG TGAGAGGCTC TGTGGAAATA GGTATTAATC
  AGAAATTGCG ACCTACAGAA ATAGGTATCT ATCAAAACCA CACAAAGCCA GGGCCTTGGG
  TCTGGCGCGG AGAGACCACC GTTTGAATTG TGTCTTGCTG CTGCTGCTGC TGCTTCCTGT
  Y
  CCCTGCTGTT TGCCTTCATT TCTCTCCCTT AAGTCTCAAG CCCAGGCAGC ACTGGTTTTG
  CAGTCACCAC ACATGGCAAA CATGAAAACT TCATTTAAAG GTGTAAGCCT ATGTAGTAGA
  GAGGGATGCC TCTCAATATA TCAGTTATCT AAGGAGAGCT GCATGCAGCA GGTTCAGACA
  CCGTTTATAT TTGAAATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875892	NES08669900	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27697562					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875892	NES08669900	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3608037 () rs orientation: forward

Symbol	Name	Function Class
Gm69303	predicted gene, 69303	within coordinates
Rr398149	regulatory region 398149	473 bp downstream
Rr588186	regulatory region 588186	392 bp distal
Rr588187	regulatory region 588187	626 bp distal
Rr588188	regulatory region 588188	493 bp proximal
Rr588189	regulatory region 588189	868 bp proximal
Rr588190	regulatory region 588190	1010 bp proximal
Tgs1	trimethylguanosine synthase 1	Intron