rs27697561 SNP Detail

Summary

• ID
  rs27697561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3608093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGTGGA AATAGGTATT
  AATCAGAAAT TGCGACCTAC AGAAATAGGT ATCTATCAAA ACCACACAAA GCCAGGGCCT
  TGGGTCTGGC GCGGAGAGAC CACCGTTTGA ATTGTGTCTT GCTGCTGCTG CTGCTGCTTC
  CTGTTCCCTG CTGTTTGCCT TCATTTCTCT CCCTTAAGTC TCAAGCCCAG GCAGCACTGG
  Y
  TTTGCAGTCA CCACACATGG CAAACATGAA AACTTCATTT AAAGGTGTAA GCCTATGTAG
  TAGAGAGGGA TGCCTCTCAA TATATCAGTT ATCTAAGGAG AGCTGCATGC AGCAGGTTCA
  GACACCGTTT ATATTTGAAA TCTGTGTGAG AGCATAAGAT AATGAGAACA GGCCCCTCAG
  CCCTTGTGGT GTAGTAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875891	NES08669902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27697561					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875891	NES08669902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3608093 () rs orientation: forward

Symbol	Name	Function Class
Gm69303	predicted gene, 69303	within coordinates
Rr398149	regulatory region 398149	529 bp downstream
Rr588186	regulatory region 588186	448 bp distal
Rr588187	regulatory region 588187	682 bp distal
Rr588188	regulatory region 588188	437 bp proximal
Rr588189	regulatory region 588189	812 bp proximal
Rr588190	regulatory region 588190	954 bp proximal
Tgs1	trimethylguanosine synthase 1	Intron