rs27697558 SNP Detail

Summary

• ID
  rs27697558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3608710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACATAAAA ATAAGATACA CCTGTAGCCA TCCACCAGAC
  AACTCCTGAC CCTTCTCTAG GATAACCCCA CCCTCTCTAG CTCTTTGAGA TGTATATCCT
  R
  ATAATACCTA TTTTATTTCA AACATCTGTA TTCTCTTTGG CTTTTAAAGT TTTTTCTATA
  GGAGGCTGAA AGTATAGCTA AGTGGTAGAT TGTATTAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37875888	NES08669845	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G
ss145941849	ENSMUSSNP1204264	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27697558					SNP	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875888	NES08669845	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3608710 () rs orientation: forward

Symbol	Name	Function Class
Gm69303	predicted gene, 69303	within coordinates
Rr398149	regulatory region 398149	1146 bp downstream
Rr588186	regulatory region 588186	1065 bp distal
Rr588187	regulatory region 588187	1299 bp distal
Rr588188	regulatory region 588188	159 bp distal
Rr588189	regulatory region 588189	195 bp proximal
Rr588190	regulatory region 588190	337 bp proximal
Tgs1	trimethylguanosine synthase 1	Intron