rs27697554 SNP Detail

Summary

• ID
  rs27697554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3609813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACATTG TAGATGTATA
  CAGTATGCCA GCTGGGTGGG TAGTGCCCCT AGGGTTCATA AGGAGAGTCT TCTGCCCATT
  TAACTAGATT ATTCCAACAC TGTAGAATAT GCATGTGAGG TTATCAGCCT GAGGAAGTTT
  AGTGATTTGC CCAGTCATTC TGCCACACAG TGGCAGAGCC AGCACCTCAG CAACTTGCTG
  Y
  ATCCCATGGA ATATTTACTG CTGAGAAAAA CAAAATTCAC TACATACCTC AATAGTTATT
  TACCATGAGA TTGGCGGTGA TAATTAGAAA CTGATTAGGA TAGGGTGAGC AAAAGAAATT
  ATATAAAAGA ATTTCTGGGT TTTCTGCCTA GCCTGACAAC CTGAGTTTAA TGTCCTGAAC
  CCACATGGTA GAAGAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875884	NES08669803	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27697554					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875884	NES08669803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3609813 () rs orientation: forward

Symbol	Name	Function Class
Gm69303	predicted gene, 69303	within coordinates
Rr588188	regulatory region 588188	1262 bp distal
Rr588189	regulatory region 588189	887 bp distal
Rr588190	regulatory region 588190	745 bp distal
Tgs1	trimethylguanosine synthase 1	Intron