rs27697548 SNP Detail

Summary

• ID
  rs27697548
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3610820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGAATG TTGCCTAGTT
  ATCCACAGAT AAAATGTTTT CATCTTTGAC TCTCCCCCCA CCCCCCACCC CCACCCCTTC
  TGGTCTTACA TTGTTACTAG TTAGATGTAA CAAAGGGACA ACCACGACTA ATGAGGAAGG
  CCGTGGCTTG GCCCTTCTTC TGCCTGTGGA TTCTGACCTG AAAATGAAGG TGCTTGTCAC
  W
  GTCACCTATG TCACTAGTCT CTGGTAATGG TAGAGGTCAA GCCCAAGCCT CACACACAAA
  ATTTTTTTAT AGTAGTTCAT TTATGAAAGT TAGTATTTGA TTTTTAAATC TGTCTTCACA
  TCATTCATCT TCAGTTGTCT TCAGTTTGAT CTTTTTTCTC ATTTCTCCTT TCCTAGCATT
  GCCTGAAATA AGATTTCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875878	NES08724651	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27697548					SNP	T	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875878	NES08724651	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3610820 () rs orientation: forward

Symbol	Name	Function Class
Gm69303	predicted gene, 69303	within coordinates
Rr588189	regulatory region 588189	1894 bp distal
Rr588190	regulatory region 588190	1752 bp distal
Tgs1	trimethylguanosine synthase 1	Intron