rs27696474 SNP Detail

Summary

• ID
  rs27696474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3085884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAGCACTGTG ATAGCACAGT GAATCACTGT GACCACATAG
  TGCAGCACTG TGGCAGGACA GTTGAGCACT GTGACACTGC AGTGGAGCAT AGTGACTGTA
  Y
  AAGTAGCATT GTGACAAAAT AGTGGAGCAT TGTGACACCA GAGTGGAGCA CTGTGACAAC
  ACAGTGAGTG CTGTCACAGT ACAGTGGAGC ACTGACAAAC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37876995	NES08724642	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27696474					SNP	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37876995	NES08724642	PERLEGEN	MM_PANEL	f	SNP	C/T
ss145930056	ENSMUSSNP2063848	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3085884 () rs orientation: forward

Symbol	Name	Function Class
Rr588147	regulatory region 588147	1448 bp distal