rs27692005 SNP Detail

Summary

• ID
  rs27692005
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5805914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGACCTT CAGAAAGACT
  CATTAGCCTT TCTGATTGAC AGAAGCTGAC AGATGGGATG CAGCCAGACA TACACCAAGT
  CACAGTGCTT TGGGGATGAA AATGAGCCTT TCACTAGCTG AACACTCCAT TCATCTCAGT
  CTTAAACAAG TATTAGTGTC TTGAATGCTG CTCTAGGATT AGCCCTCAGT CACATTCTTT
  S
  ACTCTCAAGA ATTTTAGGAT TAAATAAGAA TCCACCTTGC CAACAGAGTA TCTGAGAATT
  ATGCTTTTTC TCAAAGACAC CCATTCAATA ATTAGGAAGA AGGAAACAAA CCAAGGTTAA
  TAAGACATCC TAAGACTCCT TTGTGTGTTT GAAAACGAAT CTTGGAATCT AGTCTGGTAG
  AAGCTGGGTT TGATCCTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37869032	NES08668840	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27692005					SNP	G	G	G	G	G	C	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37869032	NES08668840	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5805914 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	within coordinates
Rr588339	regulatory region 588339	1717 bp proximal