rs27692004 SNP Detail

Summary

• ID
  rs27692004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5805945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATTGACA GAAGCTGACA
  GATGGGATGC AGCCAGACAT ACACCAAGTC ACAGTGCTTT GGGGATGAAA ATGAGCCTTT
  CACTAGCTGA ACACTCCATT CATCTCAGTC TTAAACAAGT ATTAGTGTCT TGAATGCTGC
  TCTAGGATTA GCCCTCAGTC ACATTCTTTG ACTCTCAAGA ATTTTAGGAT TAAATAAGAA
  Y
  CCACCTTGCC AACAGAGTAT CTGAGAATTA TGCTTTTTCT CAAAGACACC CATTCAATAA
  TTAGGAAGAA GGAAACAAAC CAAGGTTAAT AAGACATCCT AAGACTCCTT TGTGTGTTTG
  AAAACGAATC TTGGAATCTA GTCTGGTAGA AGCTGGGTTT GATCCTCACC ACGAAGTTGC
  ATTGCAGAAT TTTCTCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37869031	NES08668841	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27692004					SNP	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37869031	NES08668841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5805945 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	9 bp distal
Rr588339	regulatory region 588339	1686 bp proximal