rs27692003 SNP Detail

Summary

• ID
  rs27692003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5806097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGTCAC ATTCTTTGAC
  TCTCAAGAAT TTTAGGATTA AATAAGAATC CACCTTGCCA ACAGAGTATC TGAGAATTAT
  GCTTTTTCTC AAAGACACCC ATTCAATAAT TAGGAAGAAG GAAACAAACC AAGGTTAATA
  AGACATCCTA AGACTCCTTT GTGTGTTTGA AAACGAATCT TGGAATCTAG TCTGGTAGAA
  R
  CTGGGTTTGA TCCTCACCAC GAAGTTGCAT TGCAGAATTT TCTCAGACAC GAAAAATATT
  GTATGTACTG ACTGGTGATT CTTCCTTATA ATAGTAGGTT ACAAAAATTC ATGTTTATTT
  GCATCAGGAC TGAAGCTTCT GGGACTGACA GGAGTGATCA GTGGTCCTCC AGCTTGTTGC
  ACAGCAAAGA AAAAGCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37869030	NES08668842	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27692003					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37869030	NES08668842	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5806097 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	161 bp distal
Rr588339	regulatory region 588339	1534 bp proximal