rs27691996 SNP Detail

Summary

• ID
  rs27691996
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5806668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGTGATG CCGAAATGAA
  ACAGTAAGAA CCTAAATATC TGGTAGAAAT CCTTTGAAGT TTGATCTTTC CTAAGGCAGG
  TGACAGGCTG CTTCCCTGCC CTGACAAGAA TCTGGTCATT GGAAGTTGAT CTCTACAGTT
  CACTGGATTG CTAAGATAGG ATTATTGGTA GGTTGGCATA TGATACACAC TTTCAGCATG
  W
  CTTCAACTTC CAGTGGATTT GTGATGTAAT TCACAGGGAA GCTGGAGTAC CTGTATTCCT
  GTCCAATGTG TCTTGCCTCA AAAACTACAC ATTGGCTACT TTGATTCAAA ATTTTCCTAT
  TAGGATTAGA TAACTGTTTA TTATTTAACC CTGGATGTCA TAAAACTTCA TACAGATAAA
  GCATTCTAAG AAATTTGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37869023	NES08668849	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27691996					SNP	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37869023	NES08668849	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5806668 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	732 bp distal
Rr588339	regulatory region 588339	963 bp proximal