rs27691991 SNP Detail

Summary

• ID
  rs27691991
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5807417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTACTAG ATGTTAACCA
  TTGAGGATCT CCCAGCAGAT TAGCAGCAAC ACGCCTGACT CAGAAGCCAC TCATGCATGC
  TTCCACTGTG CACACTGACC TACCCACAGG CTCACCCTCT GTTCTCTAGA ATTCTGCTAT
  CAGGGCTGAG GAGGAAAGAG CAAGCCACTT TTGAATGCAA TTGTTCCCAT GGTGGGAAAC
  W
  ACTGCACTGG TGGCTTTCAA TTGATAATAT CTGGAAGGTC TCCTGCAAGA AGCAGGAGAA
  GACCTCACTA CACCCTCCTT AAGTGCATTC TTTGCCTTCT CAAGGATAAA TGAGTCACCA
  ATTTTCAAGG ATTGGTAAGC TCACATAAAT GTTTCTAGTG CTTTCTTCTT GTACATAATG
  GAGGGATTAC AGCAGCAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37869018	NES08668858	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27691991					SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37869018	NES08668858	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5807417 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	1481 bp distal
Rr588339	regulatory region 588339	214 bp proximal