rs27691987 SNP Detail

Summary

• ID
  rs27691987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5807666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGGAG AAGACCTCAC
  TACACCCTCC TTAAGTGCAT TCTTTGCCTT CTCAAGGATA AATGAGTCAC CAATTTTCAA
  GGATTGGTAA GCTCACATAA ATGTTTCTAG TGCTTTCTTC TTGTACATAA TGGAGGGATT
  ACAGCAGCAA GGTGAGCTCC TTGCGTGAGT ATATCTAAGC CAGGCTGGAC GATGTCCTGG
  Y
  CCTTGCACTC TCAGGGCAAG TTCTAGGCCA TCATTGGAGT TACTGAGCAT TTTAATTTGG
  TGGGAAGTGC GGAAATACAT GCCTTGGTAA CGCCCTAGGC CTGTAGCTAT TTCAATGAAA
  GCTTTTATTT TCCCCTACTG AGCTGACAAA TGCACATGAT TGGGAAGTGT ATGGCTCCTG
  CCTGTGGCTG GGAGAGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37869014	NES08668870	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	C	C	C		C	C	T	C
ss145955296	ENSMUSSNP3861121	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27691987					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37869014	NES08668870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5807666 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	1730 bp distal
Rr588339	regulatory region 588339	within coordinates