rs27690820 SNP Detail

Summary

• ID
  rs27690820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9663344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTTAAC ACTAACTTTT
  GTTCAAGTAA AAGAAATGAA CTACTCCCAG ATAAGATTTG CATGTGAACC TAAAGTTTAA
  GAGGCTTGCA ATATGCCGTT TTAGAATAAC TAGAATTCAA ACAGATACTG GAAGTTAACA
  CTCTGTATAT GGGCATACAT GGCCTGAGAG ATACAATAGC TGTAACATAT TAACAATGAC
  Y
  GCCTGGCAGG GCAGCAACAG TTGTCAAGCC TATGGCAAAC AGGGGTAAAA GCAATGATAA
  CAAGGCTGGT TATGGATTAA ATTTATTTTA TCAAACAATA TTCTTCCACT TTAAAAACAA
  GGCAACCCTG GCTGCCTTCC ATAATGAATG AGTCACTGGG TTAGATCTGT GAACATACAC
  ATAGGAAAAG AGTCAACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37855049	NES08648001	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690820					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855049	NES08648001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9663344 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588725	regulatory region 588725	1789 bp distal
Rr588726	regulatory region 588726	1102 bp distal
Rr588727	regulatory region 588727	883 bp distal
Rr588728	regulatory region 588728	within coordinates
Rr588729	regulatory region 588729	1442 bp proximal