rs27690817 SNP Detail

Summary

• ID
  rs27690817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9663557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG TCAACATTTC TCCAAATTCA
  R
  CAAGAGCTCT GTCTATTGTT ACGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37855046	NES08648008	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	G	G	G		G	A	G	G		A
ss145990549	ENSMUSSNP3570433	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss321039524	CHEV_4_9590704	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27690817					SNP	G	A	A	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855046	NES08648008	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9663557 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588726	regulatory region 588726	1315 bp distal
Rr588727	regulatory region 588727	1096 bp distal
Rr588728	regulatory region 588728	within coordinates
Rr588729	regulatory region 588729	1229 bp proximal
Rr588730	regulatory region 588730	1852 bp proximal