rs27690814 SNP Detail

Summary

• ID
  rs27690814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9663851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTACCT ACATCAGGTG
  GTGGCACTTG TAAGATGAGC CAAGGGAATC TCAAGGGCAA AGGACGCCCT GCAACCTTCA
  GCAGCTTTCC TGTAACTCTT CCCTTTAAGA GCTCGTGGGC CATGGGAGCT TAAAAATCTC
  TCAGTCGAAT GAGTTCGAAC TTGCTTGTCT TCAGCCATCA TGAATTTGAT TAGAATTAGT
  Y
  CCATTCAATG GCTTACTGTG AAAAGACAGG AACAGCAGCC GAAAGGAACC ATATCACATT
  CCTGAAATGC AAATGCCAAA TGCACACACA TGATCCAACA CCCTAACACA GGAGGAACAG
  AAAATAAAGG TAAAATTACT TATAATGTCT GATAAACCAC CACCAGGCTC CCCGAAGTAC
  CAGCAGAGCT CATGAACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37855043	NES08648013	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690814					SNP	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855043	NES08648013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9663851 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588726	regulatory region 588726	1609 bp distal
Rr588727	regulatory region 588727	1390 bp distal
Rr588728	regulatory region 588728	42 bp distal
Rr588729	regulatory region 588729	935 bp proximal
Rr588730	regulatory region 588730	1558 bp proximal
Rr588731	regulatory region 588731	1972 bp proximal