rs27690812 SNP Detail

Summary

• ID
  rs27690812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9663878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAGATG AGCCAAGGGA
  ATCTCAAGGG CAAAGGACGC CCTGCAACCT TCAGCAGCTT TCCTGTAACT CTTCCCTTTA
  AGAGCTCGTG GGCCATGGGA GCTTAAAAAT CTCTCAGTCG AATGAGTTCG AACTTGCTTG
  TCTTCAGCCA TCATGAATTT GATTAGAATT AGTTCCATTC AATGGCTTAC TGTGAAAAGA
  Y
  AGGAACAGCA GCCGAAAGGA ACCATATCAC ATTCCTGAAA TGCAAATGCC AAATGCACAC
  ACATGATCCA ACACCCTAAC ACAGGAGGAA CAGAAAATAA AGGTAAAATT ACTTATAATG
  TCTGATAAAC CACCACCAGG CTCCCCGAAG TACCAGCAGA GCTCATGAAC TAGATCCCAG
  AATACACGGC TGCAGTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37855041	NES08648015	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690812					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855041	NES08648015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9663878 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588726	regulatory region 588726	1636 bp distal
Rr588727	regulatory region 588727	1417 bp distal
Rr588728	regulatory region 588728	69 bp distal
Rr588729	regulatory region 588729	908 bp proximal
Rr588730	regulatory region 588730	1531 bp proximal
Rr588731	regulatory region 588731	1945 bp proximal