rs27690807 SNP Detail

Summary

• ID
  rs27690807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9664050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATTCAA TGGCTTACTG
  TGAAAAGACA GGAACAGCAG CCGAAAGGAA CCATATCACA TTCCTGAAAT GCAAATGCCA
  AATGCACACA CATGATCCAA CACCCTAACA CAGGAGGAAC AGAAAATAAA GGTAAAATTA
  CTTATAATGT CTGATAAACC ACCACCAGGC TCCCCGAAGT ACCAGCAGAG CTCATGAACT
  R
  GATCCCAGAA TACACGGCTG CAGTGGGACT CAGAGAGTGA CCATCTCATC TCTAGCCTTC
  TGTTTCTGTT TCCGAATGGC AAAAATCTAC CCATGAGTAC AGTGTTGAAC AGCTAGCCAC
  TGGGGCAGCA GATGGAGCCA GCCAGGCACC ACAGGTTTAG GGACAGACAG TTGAAGCTTT
  CCTCAAATTA TCCTGGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37855036	NES08648020	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690807					SNP	A	A	A	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855036	NES08648020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9664050 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588726	regulatory region 588726	1808 bp distal
Rr588727	regulatory region 588727	1589 bp distal
Rr588728	regulatory region 588728	241 bp distal
Rr588729	regulatory region 588729	736 bp proximal
Rr588730	regulatory region 588730	1359 bp proximal
Rr588731	regulatory region 588731	1773 bp proximal